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What went wrong with my Pursuit car alarm/remote start system? - pursuit remote car start how to use

I had an alarm, remote start looking for the 2006 Jeep Commander started two days ago. The mechanic I spoke to leave a "hole", which demonstrates a feature of the remote start was, and. Basically, if you stop at a gas station and want to run your car while you click twice to run on the remote control and remove the key post. The car is running. Then he turned back, you simply change the key in the ignition, then to "ON", and car. It seemed somewhat at ease, so I have tried. Twenty minutes later I was driving on the highway, blocked singing at a certain distance, the engine died, and the wheel while driving! Is also the information board, said: "Programming Enable" and a red light flashing beside it. What happened? Obviously, the timer remote starter has not let go, if I replace the key in the ignition, but why did it happen? Should I continue to use the "stop" function?